Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs12257935 | chr10:104803062 | C/A | 5.02E-9 | 490 | 15.23 | 17.68 | 32.1 | KM Plot |
| THCA | rs12257941 | chr10:104833161 | C/T | 5.02E-9 | 490 | 15.23 | 17.68 | 32.1 | KM Plot |
| THCA | rs12258551 | chr10:104767892 | C/G | 5.04E-9 | 490 | 15.2 | 17.73 | 32.1 | KM Plot |
| THCA | rs12258949 | chr10:104727524 | G/T | 2.77E-8 | 490 | 15.48 | 17.33 | 19.1 | KM Plot |
| THCA | rs12260962 | chr10:82262826 | C/T | 6.05E-5 | 490 | 16.27 | 15.17 | 17.13 | KM Plot |
| THCA | rs12261040 | chr10:104665397 | T/C | 3.36E-8 | 488 | 15.33 | 17.13 | 19.1 | KM Plot |
| THCA | rs12264456 | chr10:104830634 | C/T | 5.02E-9 | 490 | 15.23 | 17.68 | 32.1 | KM Plot |
| THCA | rs12266291 | chr10:104806884 | G/A | 5.02E-9 | 490 | 15.23 | 17.68 | 32.1 | KM Plot |
| THCA | rs12268849 | chr10:104737682 | G/A | 2.77E-8 | 490 | 15.48 | 17.33 | 19.1 | KM Plot |
| THCA | rs12269333 | chr10:82266805 | C/T | 7.86E-6 | 487 | 16.3 | 14.93 | 14.93 | KM Plot |
| THCA | rs12273522 | chr11:96119605 | G/A | 3.06E-6 | 476 | 15.87 | 15.25 | 22.45 | KM Plot |
| THCA | rs12275268 | chr11:7604579 | A/T | 1.11E-6 | 488 | 15 | 20.15 | 10.4 | KM Plot |
| THCA | rs12279353 | chr11:7410835 | T/G | 7.85E-5 | 487 | 23.83 | 14.38 | 16.27 | KM Plot |
| THCA | rs12280148 | chr11:96168973 | G/A | 0.000263 | 482 | 15.2 | 16.65 | 15.72 | KM Plot |
| THCA | rs12283107 | chr11:96077310 | C/G | 7.34E-5 | 488 | 15.7 | 15.9 | 22.45 | KM Plot |